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The dataset was parsed by Doodly to produce two data files (paralog_01.txt and paralog_03.txt) to be used in the “fetch” step. The two datasets were then converted into the XML format by converter.pl script and loaded in cRAWld by setting the paralog definitions to “-t paralogs”. The “-v” option enables the display of the sequence identity values for each pair of proteins. The output of each run was saved in the file 827ec27edc